BtaINT0058880 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40258129-40258689:-
Coord C1 exon
chr7:40258544-40258689
Coord A exon
chr7:40258453-40258543
Coord C2 exon
chr7:40258129-40258452
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCCACGTGTCCCCAATCCAGGGT
3' ss Score
6.29
Exon sequences
Seq C1 exon
GTGGGGAATATTCCAGCTTCCTGCAGGAGGCTCAGGTGCCACTCATCGACCCGCAGCGCTGCTCCGCCCCCGACGTGCACGGAGCAGCCTTCACCCAGGGCATGCTCTGCGCTGGCTTCCTCGAGGGCGGCACCGACGCATGCCAG
Seq A exon
GTGAGCCTGGGGCCCCGCTTGGCGCCCTTCCCCAACCCAGTCAAGGGCGGACTCCCAGCCAAGGACCCTGAGCCACGTGTCCCCAATCCAG
Seq C2 exon
GGTGACTCCGGAGGCCCTCTAGTGTGTGAGGATGAGACCCCTGAGCGCCAGCTCATCCTGCGAGGCATAGTCAGCTGGGGCTCAGGTTGCGGCAACCGCCTCAAGCCAGGTGTGTACACAGACGTGGCCAACTACCTAGCCTGGATTCGGGAGCACACCGCTTCCTGACAGCCCGGCGACTGCTTTCCCTTCTGAGCAGTTCTGGAATGGAAGCGTGGCTGACGGGGAATTATGGATAGCAAGGATTGTTTTCCATTCCCCCCAGCGCTGCCAGCCCGGGGCCAGGCATGGCATAGGCACTCAATAAAGTGCTTTTGAAGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.2=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCCAGGGCATGCTCT
R:
GTGTACACACCTGGCTTGAGG
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]