DreINT0168589 @ danRer10
Intron Retention
Gene
ENSDARG00000042993 | try
Description
trypsin [Source:ZFIN;Acc:ZDB-GENE-010131-7]
Coordinates
chr16:25165732-25166184:-
Coord C1 exon
chr16:25166048-25166184
Coord A exon
chr16:25165964-25166047
Coord C2 exon
chr16:25165732-25165963
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GAAATACTTGTGGATTGCAGGGT
3' ss Score
4.35
Exon sequences
Seq C1 exon
GCAATTACCCAAGCCGTCTGATGTGCCTGAATGCTCCCATTTTGAGCGACAGCACCTGCAGAAACGCCTACCCTGGTCAGATCTCCTCTAACATGTTCTGCGCTGGTTTTATGGAGGGAGGCAAGGACTCCTGCCAG
Seq A exon
GTAAGATCACGCTTTTAATGTCTTGCAAACCAAAACACTCTTTATAGCAATTACTGACTTGTCTGAAATACTTGTGGATTGCAG
Seq C2 exon
GGTGACTCTGGTGGCCCAGTTGTGTGCAACAACCAGCTGCAGGGTATCGTGTCCTGGGGTTATGGCTGTGCCCAGAGGAACAAGCCCGGTGTTTACGCCAAGGTCTGCAACTTCACCACCTGGATCAGAAACACCATGAACTCCAACTAAGCTCGGGGAAGTTTTGAGGTCGTTATCATGGCGTGTTGCAATACCATCTGGCAAAGCAAAAATAAATGTCTGATAACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042993:ENSDART00000077661:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=82.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGATGTGCCTGAATGCT
R:
ATACCCTGCAGCTGGTTGTTG
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]