MmuINT0166407 @ mm9
Intron Retention
Gene
ENSMUSG00000054106 | Try4
Description
trypsin 4 [Source:MGI Symbol;Acc:MGI:102757]
Coordinates
chr6:41254935-41255532:+
Coord C1 exon
chr6:41254935-41255071
Coord A exon
chr6:41255072-41255337
Coord C2 exon
chr6:41255338-41255532
Length
266 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ACTATATTTCTCCCTTCCAGGGT
3' ss Score
10.93
Exon sequences
Seq C1 exon
TGAACAACCCAGACCTGCTCCAGTGCCTGGATGCCCCACTGCTGCCTCAGGCTGACTGTGAGGCCTCCTATCCTGGAAAGATCACCAATAACATGATCTGTGTTGGCTTCCTAGAGGGAGGCAAAGATTCCTGCCAG
Seq A exon
GTAATTGGCTTCACTCTCACAAAAATAATTTGTTTTCCTAGGATTGGGGTTAGCATGCCCAAGTGTATGAGGCAGGAAGTTTCCTGTAGTGACTCCATGGAAAAGTGAGGAGGGCTATTCTGGAGGTTATTTCAACATGTCAGCCAGAACAGAGGATGGGCTAACCAAGAGAGGCAAAGCATGGCTAGAATGGCATCTTCAGGTCAGAGTAATGTGGTCCTTTTTCCTTGTGCCTCTTCCTTCAATACTATATTTCTCCCTTCCAG
Seq C2 exon
GGTGACTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAGGGCATTGTCTCCTGGGGCTATGGCTGTGCCCTGAAGGACAACCCTGGTGTGTACACCAAGGTCTGCAACTATGTGGACTGGATTCAAAACACCATTGCTGCAAACTAAGCATCCCTTTGAAGTCATTATGTCAATAAAGTGAATATTCCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054106-Try4:NM_011646:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=82.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACCCAGACCTGCTCCA
R:
AAGGGATGCTTAGTTTGCAGC
Band lengths:
295-561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: