HsaINT0132923 @ hg38
Intron Retention
Gene
ENSG00000204983 | PRSS1
Description
protease, serine 1 [Source:HGNC Symbol;Acc:HGNC:9475]
Coordinates
chr7:142752431-142753070:+
Coord C1 exon
chr7:142752431-142752567
Coord A exon
chr7:142752568-142752867
Coord C2 exon
chr7:142752868-142753070
Length
300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TTGTCCCTTCTTCCCCCCAGGGT
3' ss Score
11.4
Exon sequences
Seq C1 exon
CCGACTACCCAGACGAGCTGCAGTGCCTGGATGCTCCTGTGCTGAGCCAGGCTAAGTGTGAAGCCTCCTACCCTGGAAAGATTACCAGCAACATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCATGTCAG
Seq A exon
GTGATTTGACCAACCCTTCCCATGCTGAGGCTCCCACTGATACCTAGGCCCCACCAGGGAAAAGGATTTGAACTCAAAAGGTGGTGGGGCTGAGGAGGCTCCCTGCAGTGCCCACATGGAGAAGTGAGGAAGACTCCCTTGGGCTGCATCTTGTCTGCTTAGGAAGAACAGAGAATGGGCCACCATGAGAAGGACATGGAGCCACAGAGCTGGCTGGAAAGGGGTCTTTTAAGGTTCAGAGTAAATGTAGCTATATTCCTCCTCCATCTCTCCATACAACTTGTCCCTTCTTCCCCCCAG
Seq C2 exon
GGTGATTCTGGTGGCCCTGTGGTCTGCAATGGACAGCTCCAAGGAGTTGTCTCCTGGGGTGATGGCTGTGCCCAGAAGAACAAGCCTGGAGTCTACACCAAGGTCTACAACTATGTGAAATGGATTAAGAACACCATAGCTGCCAATAGCTAAAGCCCCCAGTATCTCTTCAGTCTCTATACCAATAAAGTGACCCTGTTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204983:ENST00000311737:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACCCAGACGAGCTGCAG
R:
GAGAACAGGGTCACTTTATTGGT
Band lengths:
338-638
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development