GgaINT0115336 @ galGal3
Intron Retention
Gene
ENSGALG00000014755 | F1NP19_CHICK
Description
NA
Coordinates
chr1:81245617-81246625:-
Coord C1 exon
chr1:81246489-81246625
Coord A exon
chr1:81245874-81246488
Coord C2 exon
chr1:81245617-81245873
Length
615 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CCCTAATTTTTTCTCTCCAGGGT
3' ss Score
10.2
Exon sequences
Seq C1 exon
ACAATTACCCTGAACTTCTCCAGTGCCTGAACGCTCCGATTCTGAGTGACCAAGAGTGCCAGGAGGCCTACCCGGGTGATATCACCAGCAACATGATCTGTGTCGGGTTCCTGGAGGGTGGGAAAGACTCGTGCCAG
Seq A exon
GTAAGAGTTGATGTTGGTGCAGAGCCCTGGGCCACACACCCCCAGGGTGCCCCAGGCTGTATGGTGTGTTTCAGCACTTGCCAGTGTGCTTAGGCCTCCTCCTAGAGTCGTAGAATGGCTGAGGGTGTGAGGGACCTTCAGGATCACTGAGCTCCAAGCCCCCGCCTTGGGCAGGCCGGGTTGCCACCAACCAGATCATGCTGCCCAACACCCTATCCAGCCTGTCCTTGCACACCTCCAGAGGGACGCGGCATCCACAACTTCTCTGGTCAATCTCTTCCAGCGCCTCACAAGCCTTTCACTAGAGAGGATGCCTCATCATTCTGTGTTCTTTTCTGACACAGTATCTTTCCAGCAGGGTTTGGCTGCAGCATGGCCTTTGCCAAAAACAGCAGGTCCAACCACATCTGCTGGGCACGCAGTATAGTCACAGTGAATTGTTAGGAAGTAGGGAAGTCCAGCAAACAAGGACTGGTATCTGCCTGCGCTCCCATCTCAGGGCCTGCTGCATTTCCCGGTGCATTGCCTAGATTCTTTGCACCAGGTCACAATCTTTCCAGGTGACAGTCTGCTTTCTTGATTTAGAAGTTCATGCCCCTAATTTTTTCTCTCCAG
Seq C2 exon
GGTGACTCGGGTGGACCAGTTGTGTGCAATGGAGAACTGCAAGGAATTGTGTCCTGGGGAATTGGATGTGCTCTGAAAGGCTATCCCGGAGTTTACACCAAGGTCTGCAATTACGTTGACTGGATCCAGGAAACCATTGCAGCCTACTGACAGCCAGACGGCCTCATGGCTCCTTGGCTGCTCCCCTCCTGCCCTTATCATTTTCCTCTTAAGAAAATGGCAACAGCACAAATAAAAACCTTACTTAAATGAACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014755:ENSGALT00000030486:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=82.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAACGCTCCGATTCTGAG
R:
TTGTGCTGTTGCCATTTTCTT
Band lengths:
343-958
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]