MmuINT0127394 @ mm9
Intron Retention
Gene
ENSMUSG00000062751 | Prss1
Description
protease, serine, 1 (trypsin 1) [Source:MGI Symbol;Acc:MGI:98839]
Coordinates
chr6:41413184-41413785:+
Coord C1 exon
chr6:41413184-41413320
Coord A exon
chr6:41413321-41413582
Coord C2 exon
chr6:41413583-41413785
Length
262 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
ACTGTGTTCCTCTTTCCCAGGGT
3' ss Score
10.74
Exon sequences
Seq C1 exon
TCAGTGAACCAGACCTGCTCCAGTGCCTGGATGCCCCACTGCTGCCTCAGGCTGACTGTGAGGCTTCCTATCCTGGGAAGATCACTGGTAACATGGTCTGTGCTGGCTTCCTAGAGGGAGGCAAGGATTCCTGCCAG
Seq A exon
GTGATTGCCACTCTCCACTTATGCAGACCTCAGTTCTGGGAGTTGAGCTTCAAAGCCTAGTGGTGTGAGACAGAAAGTGTGCTGTGGTGTTGTGGTGAATGAGGAGTAAGGGGATCTTTTTGCATTTCAACAAATTAGTTAGGATAGCAGGTGGGCTGTGGAGATAAAGAAATGTTAACATGAGAATAAACAGGTATTGAGCTTACTATATGCAGCCCTATTACACATGCCCTTACTAATACACTGTGTTCCTCTTTCCCAG
Seq C2 exon
GGTGACTCTGGTGGCCCTGTGGTCTGCAATGGAGAGCTCCAGGGCATTGTCTCTTGGGGCTATGGCTGTGCCCTGCCAGACAATCCTGGTGTGTACACCAAGGTCTGCAACTATGTGGATTGGATTCAGGACACAATTGCTGCCAACTAGAGATTCCCAATCCCTCTGCAGTCACTGTCAATAAAGTGAAATATTCATTACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062751-Prss1:NM_053243:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=82.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCAGACCTGCTCCAGTG
R:
TGACTGCAGAGGGATTGGGAA
Band lengths:
307-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: