HsaINT0132970 @ hg19
Intron Retention
Gene
ENSG00000010438 | PRSS3
Description
protease, serine, 3 [Source:HGNC Symbol;Acc:9486]
Coordinates
chr9:33798484-33799229:+
Coord C1 exon
chr9:33798484-33798620
Coord A exon
chr9:33798621-33799025
Coord C2 exon
chr9:33799026-33799229
Length
405 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TTGTCCCTTCTTCTCCCCAGCGT
3' ss Score
9.17
Exon sequences
Seq C1 exon
CTGACTACCCAGACGAGCTGAAGTGCCTGGATGCTCCGGTGCTGACCCAGGCTGAGTGTAAAGCCTCCTACCCTGGAAAGATTACCAACAGCATGTTCTGTGTGGGCTTCCTTGAGGGAGGCAAGGATTCCTGCCAG
Seq A exon
GTGATTTGACCCTTTCCCATGCTGAGGCTCCCACCGATACCCAGGCCCCACCGGGGAAAAAGATTTGAACTCCCAAGGTGGCAGGGCTGAGGCGGCTCCCTGCAGTGCTCCCATGGAGAAATGAGGAAGGTGGCGGGGCTGAGGCGGCTCCCTGCATTGCCCCCATGGAGAAACGAGGAAGGTGGCGGGGCTGAGGAGGCTCCCTGCAGTGCCCCCATTGGGAAATGAGGGAGGCTCCCTTGTGCTGCACGCTGCCTGCTTAGGAAGAACAGAGAATGGGCCACCGTGGGAAGGACGTGGAGCCACAGAGCTGGCTGGAAAGGGGTCTTTTAAGGTTCACAGTAAATGTAGCTATATTCCTCCTCCATCTCTCTCTTTATACAACTTGTCCCTTCTTCTCCCCAG
Seq C2 exon
CGTGACTCTGGTGGCCCTGTGGTCTGCAACGGACAGCTCCAAGGAGTTGTCTCCTGGGGCCATGGCTGTGCCTGGAAGAACAGGCCTGGAGTCTACACCAAGGTCTACAACTATGTGGACTGGATTAAGGACACCATCGCTGCCAACAGCTAAAGCCCCCGGTCCCTCTGCAGTCTCTATACCAATAAAGTGGCCCTGCTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010438-PRSS3:NM_007343:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.8=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.0=80.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACTACCCAGACGAGCTG
R:
GAGCAGGGCCACTTTATTGGT
Band lengths:
338-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)