HsaINT0059124 @ hg19
Intron Retention
Gene
ENSG00000131187 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:3530]
Coordinates
chr5:176829139-176829699:-
Coord C1 exon
chr5:176829551-176829699
Coord A exon
chr5:176829461-176829550
Coord C2 exon
chr5:176829139-176829460
Length
90 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GCTGCGTGTTTCCGACCCAGGGT
3' ss Score
6.41
Exon sequences
Seq C1 exon
GGGCGGAGGAATATGCCAGCTTCCTGCAGGAGGCGCAGGTACCGTTCCTCTCCCTGGAGCGCTGCTCAGCCCCGGACGTGCACGGATCCTCCATCCTCCCCGGCATGCTCTGCGCAGGGTTCCTCGAGGGCGGCACCGATGCGTGCCAG
Seq A exon
GTGAGCTCTTAGCCCGGTTGGCGCCCTTCCCCGAGGCCGTCAGGCACAAATCTCAGGTCCACAGCGCTGAGCTGCGTGTTTCCGACCCAG
Seq C2 exon
GGTGATTCCGGAGGCCCGCTGGTGTGTGAGGACCAAGCTGCAGAGCGCCGGCTCACCCTGCAAGGCATCATCAGCTGGGGATCGGGCTGTGGTGACCGCAACAAGCCAGGCGTCTACACCGATGTGGCCTACTACCTGGCCTGGATCCGGGAGCACACCGTTTCCTGATTGCTCAGGGACTCATCTTTCCCTCCTTGGTGATTCCGCAGTGAGAGAGTGGCTGGGGCATGGAAGGCAAGATTGTGTCCCATTCCCCCAGTGCGGCCAGCTCCGCGCCAGGATGGCGCAGGAACTCAATAAAGTGCTTTGAAAATGCTGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131187-F12:NM_000505:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGTTCCTCTCCCTGGAG
R:
GATGATGCCTTGCAGGGTGAG
Band lengths:
183-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)