MmuINT0060098 @ mm10
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55417958-55418500:-
Coord C1 exon
chr13:55418352-55418500
Coord A exon
chr13:55418267-55418351
Coord C2 exon
chr13:55417958-55418266
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GCTGCCTGTTCCCCACCCAGGGT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGGCTGAAGAATACTCCACCTTCCTGCAGGAGGCACAGGTTCCCTTTATCGCCCTGGATCGCTGCTCCAACTCTAACGTGCACGGAGACGCCATTCTCCCTGGGATGCTTTGCGCTGGCTTCTTGGAGGGAGGCACCGATGCCTGCCAG
Seq A exon
GTCAGCCCTGGGGTCCTGGTAGGTACCTTGGTCCCTGCCTGTCAAGCATAAGGCAAGAACCACGTGCTGCCTGTTCCCCACCCAG
Seq C2 exon
GGTGACTCCGGGGGCCCTCTGGTGTGTGAGGAAGGAACTGCAGAACATCAGCTCACCCTGCGCGGAGTCATCAGCTGGGGCTCCGGCTGTGGTGACCGCAACAAGCCCGGAGTCTACACAGACGTGGCCAACTACCTGGCTTGGATCCAGAAGCATATTGCTTCATAACTAACCAGGCTTTATCCTTCCCTCCTTGTGTGCTCCTTGGGATGGGACGATGAATGTGGCATGCTGGGTCACAGTGAAGCTAGTGCCCCGACACTGGGGGCACAGAAACTCAATAAAGTGCTTTGAAAACGTTCCTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492:ENSMUST00000021948:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCACCTTCCTGCAGGAG
R:
GCAGTTCCTTCCTCACACACC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types