DreINT0007589 @ danRer10
Intron Retention
Gene
ENSDARG00000062758 | CR352265.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QV82]
Coordinates
chr24:21667169-21668349:-
Coord C1 exon
chr24:21668213-21668349
Coord A exon
chr24:21668121-21668212
Coord C2 exon
chr24:21667169-21668120
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TATACAGTATGTTCACACAGGGA
3' ss Score
4.04
Exon sequences
Seq C1 exon
GAGAACTAGCCACATTGCTGCAGGAAGCCACGGTTAACATCATCAATCACAACACTTGCAATAAAATGTACGATGATGCGGTCACTCCCAGAATGCTTTGCGCCGGAAACATTCAGGGAGGAGTGGACGCTTGTCAG
Seq A exon
GTCAGTGTGTGCTTTTCCTTTCCACCTCTTATCATCGTTCCTTCCCTGTTCACATGCAGTACAGTACTCACGTATACAGTATGTTCACACAG
Seq C2 exon
GGAGACTCCGGAGGGCCTTTAGTGTGTCTGGAACGGGGCCGCAGGTGGTTTCTAGCAGGCATCGTGAGTTGGGGTGAGGGCTGCGCTCGACAGAATCGGCCCGGAGTTTACACGCGTGTCATTAAGTTCACAGACTGGATTCACCAGCAGACGAAAGGCCAGGTGTGACACGCACAAAAACACACACACACACACATGCATATACAAATATATATATAAATATATACACACCAGAGAACGGGTGATCACCCATGCTCAGATGCATGTGATGGAAGTGCACCGGCCCTGCTTTCATGGTGCACAGACATGGCAAACATCAACACCCCTGCATCAGAAAGCAATGTCCCATAATTCCCATGTTGCTCGGAGTTTGAAATCTCCACTCACAGTCTGTCAGTCTTTATGCCCCAAACTCAGCCAACACAAACCAGCTGTACTTTCTAAAACCTGGACTACTAATGTAGAGATTGAAGAGATGTGCATTATTTGCAGCGGAGAGAGCTCTCTTGGGAAGACTTGTATTATTGGGCTAAATGTTAGTTTTCATTCATTTATTCGTGTTCATGGCATTATTTTCACATGTTTTTCATTGTTTAAGGATGATAAACCCTCCACTTCGTTGTCCGTTTCTACTGTGAAATTGATTGGATGTCAGATATTATGACCAGCATGACTTTTAGTGCTTTTGTTATTGCTCTTATGTAGGTTTTTGTTGTTATGAATGTTTGCTGGCTTGTCTTTGAGAGTGTGAGAAAGCAGTTGCAGCCCCCTAAGACTCTCTCTGCTGGTCATGATTTGACATTACATCTTACTCAGTACTCCTTTAGTTAACGCACATATTGTTATCATGATCTGTACTCCCTACAACAACCTGATGTAAATGTCACCACTGAGCAAATGTTGATACTTTATGTTAGATATCTGAAAGTTAGAACTATATTAAAATGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062758:ENSDART00000091096:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.2=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.7=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCGGTCACTCCCAGAATG
R:
GTAAACTCCGGGCCGATTCTG
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]