MmuINT0153112 @ mm9
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30896175-30898123:-
Coord C1 exon
chr9:30897987-30898123
Coord A exon
chr9:30897613-30897986
Coord C2 exon
chr9:30896175-30897612
Length
374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TATTTATTTATTTTGCGTAGGGT
3' ss Score
6.96
Exon sequences
Seq C1 exon
GTACCGGAGCGCTGATCCTGCAGAAGGGTGAGATCCGTGTCATCAACCAGACCACCTGTGAGGACCTCATGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq A exon
GTGCGTGGGGCCGAGGGGGAGGGGGAGGGGGGGGACCTTGAAAGGCGGAAGCTGGGACCAGACCAGGGAGTGGAGGAGCCGTGCAGAATGCGAAGGGAAAGAGGCAGGGTAAGGAAAGAGAAAGGCAGGGCAGGGGAAGAGGAGGGGGTGGGGCTAACTAGGCCGGAGCTGGGGATAGGTGGGGCTGGGGAGAGCCCGGCAGGGGTAAGCAGGAGTCCTGGGGAAGTCATGCTTCCGGGAGAGGTCAGTTGGCCATGGGAGAGGCTACTTAGGTTGAGGCAGCTACTAAGAGTTTAGGTAAGGGACTACTCACGCACAGGATTCGGTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTGCGTAG
Seq C2 exon
GGTGACTCTGGTGGCCCCTTGTCAAGCGCGGAGAAAGATGGGCGAATGTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGCTCCCTGTAGTTCGGGACTGGATCAAAGAGCACACTGGGGTATAGCAGCATGGACAGACAGCCGACCACAAACACCCACAGGGATGCCCGACATGCACACCTGGATACAGGAGAGGAACACTGACGACATTTATGCTGTGGCCTCCCCCCCCCAACACAACCCAGACTGTGAACTGCATCCTTAGGACTCAGAGTTCTTCCAAAGTGGGACCCCCTCAAGAGTTGGAGAGAGAACTTGCGTGCTAGCGGCCCAGCCTGGGGGCAAGGGTTTGATGGCAGCCTTCCCCCTCTAGCCCTGAGCTGGGTGAAGATGATGCTGTCCCGGAGAGCTGCTTCCAACTGTCATTGAGCTCCCGGGAGCCCTATGGGAGGAGGGGCTCAGGGTCACTCTTTTCAGGAAGCGCCAGCCCTAGGAACCCCAGAAAAGAGTGGTACCTAAGGCTGAAATTGTTTTGCTGTTGCCAGGGGTGGGTATTTGAGAGTAAAACATTTTATTTCTTTTTAGGTAATTTGTTTTTCTTGCTATACTACTACACCTCCCTCCCCCATCCCCTCTATGAATAGTTTTCTTTGCACTAAACTAGAACTAAATTTCCCCTAGTACAGACCCTGTGCAGACCACAGCGTCTTGTCTTCCCTAGGCCAAGGGCTGTCTGTCCTTGGTTATAACAAGTGCTCACTTGTAAGCCAGGCCCTGATTGCAACAGAAACTTGGTCAGAAGGAAGTTTGGGGGAGATGAATCATGTGACTGTCCAGGACTGACCCTGGCCTTGCCCTACCGGGGGTTGAGAGGACAGGCAGTAGTAGTCATGGTGACATGTCAGAGGAAGAGGGAGATGCCAAGTGTTGTGGGTTTGCTTTCGGTGCACAGGTGTCACACATGTTGTGTATACACACATGGATGCATACACGAGGTGCACATGGATGCAGGGCCCAGCATGGGATGGGTGGATGGGTTGCAGTTCGGGGGATGATGCTGTGTTAGTGATGGGTGCTTACACCTCCTATGCCATCCCTCTTTCTACTTTATCAAGTATTCTCAACTTAGTTGGAGTTGCCCAGGGAGGTGGGGCTGTAGATCTGAGGAGAGGTTAGAGATCTTTTGAAAGGCCCTTCGAAGGCTCCTGGGGCCATGCATGGGCTGAGGCTGAAGAAGGAGTGGCCTCTGGTAGATGTGGAGGTGACTGTGTCAGGGTCATGAGGGAAGCCAGCTCTGCCCATTGCTTTTCCCCAGCTCAGGCCTCCCGAGCTCCTGGACGTTGCTGTTGCTTACCATTGGCCTTTGTTAACACAAAGTTAAGACAGTTGTTCTGACTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-St14:NM_011176:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.151
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGAATGATGTGTGTGGGT
R:
GGATGCAGTTCACAGTCTGGG
Band lengths:
349-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: