RnoINT0144088 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32240133-32241168:-
Coord C1 exon
chr8:32241032-32241168
Coord A exon
chr8:32240738-32241031
Coord C2 exon
chr8:32240133-32240737
Length
294 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
AGGATTCGTTTTTTGCGCAGGGT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAACTGGAGCACTGATCCTGCAGAAGGGAGAGATCCGGGTCATCAACCAGACCACCTGTGAGGAACTCTTGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq A exon
GTGCGTGGCCTTACAGGGGAGAGAGGCAGAGCTGGAAGGGGAGGGATCTTAAAAGGCTGGGGAAAGGCCGGACCTGGGAGAGGAAGGGCAGTGCAGAATGCAAAGGGAAGGGGCGGGGCTAGGGAAAGAGAAAGGCGGGGCGGGGGAAGGGGAGAAGGAAGCTAACAAGGCTGGAGCTGGGGATCGGTGGGGCTGGGGAGAGCCTGGGCAGAGGTAAGCAGGAGTCAAGGGGAGGTCAAGCTGCTGGGAGAGTTTAGGTAAAGGCCTCATGCACAGGATTCGTTTTTTGCGCAG
Seq C2 exon
GGTGATTCCGGTGGCCCCTTGTCCAGTGTGGAGAAAGATGGGCGAATCTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGATCCCTGAAGTTCGGGACTGGATCAAAGAGCAAACTGGGGTATAGAAGCATGGACAGACAACCCACCATGAACTCGCAAAGGGATGCCCCCCACGCGTACCTGGATACAGCAGAGGATCGCTGAGGACATTTGTGCTGTGGCCTCTCCCCCACATCCCAGACTGTGAACTGCTTCCCTAGGACTCAGAATCCTTCCCTGAGCTTCCAAAGTGGGACCCCTCAGGAGTTGGCCAGAGATCTTCTGTGCTGGTGGCCCAGCCCGGGGTGGGGCAAGGATTTGATGGCAGCCTTCCCCTCTAACCCTGAACTGGGTAAAGACGATGCTTTCCTGGAGAACTGCTTCCAGACTCTAAAGGAAAACTATCGTCGCGCTCCTGGGGGCCCTATGGGCAGAGGGGCTGCAGGGTCTTTCAGGAAGCTCCAGCCCTAGGGACCCCAGAAAAGAGTGGCACCTATGGCTGAGTTTGTTTTGCTGGTATTTGAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGACCACCTGTGAGGAA
R:
TCCCTTTGCGAGTTCATGGTG
Band lengths:
294-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]