BtaINT0141593 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019712 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr29:36970487-36971367:+
Coord C1 exon
chr29:36970487-36970623
Coord A exon
chr29:36970624-36970758
Coord C2 exon
chr29:36970759-36971367
Length
135 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AAGGCCTGCTCTCCCCGCAGGGC
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCCAGGGGGCTATGATCCTGCAGAAGGGCGAGATCCGGGTCATCAACCAGACGACTTGCGAGCACCTGCTGCCGCAGCAGATAACCCCACGCATGATTTGCGTGGGCTACCTCAGCGGTGGCGTGGACGCCTGCCAG
Seq A exon
GTGGGCGTGGGGCAGGGACGCAGGGGGCGGGGGCATAAGCGGGGACGGGTGTGGGCGGGGCTGGCATGGTGGGCGTGGGGTGGAGGCGGCGACCAGGGTCGGGGCACACTGTATCAAGGCCTGCTCTCCCCGCAG
Seq C2 exon
GGCGACTCCGGGGGCCCCCTGTCCAGCCCGGAGGAGGATGGGCGGATGTTTCAGGCCGGCGTGGTGAGCTGGGGAGAGGGCTGCGCACAGAGGAACAAGCCCGGCGTGTACACGAGGCTCCCAGTGTTCCGGGACTGGATTAAAGCGCAGATCGGGGTATAGATACGAGGCCCAGCTGCAGTCACCCCAGGTGCCCACCTGCCGGCCGAGGAAGGGATTGCTCCGCATGCCCCCGCCTCGGGCCCCGGAACCCAGACTGTGAACTGATCCCCGAGACTGCGGATGGAGGGGCCTTCCCACTCAGCCTCGGAAGTGGGGGTGGGGTGGGGAGGACCCGGCTGTGCCGGGAGGCGCGTTAGAGGACGGAACCTCCCCTCTCCAAGCTGGCCTGCTTCGCTTGGTCTGCCTGGAGCACGGGAGCAGCTGTCGTGTGGCCTCTGGGACCCCTTGGTGGGGCTGGTGCCACCCCCAGGGTCACAGTCTTCAGGAAGCTCAGGCCCGAAGGCCCCGAACGTCAGCCAGGTCCAGGATCAGAATGTCTTACCGGCTCCAAGGGTGGGGTTCACTGTGTGTATTTGTGTGTATGAGTAAAACGCTTTATTTCTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019712:ENSBTAT00000026272:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAACCAGACGACTTGCGA
R:
ACCCCGATCTGCGCTTTAATC
Band lengths:
255-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]