MmuINT0060098 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55519327-55519861:-
Coord C1 exon
chr13:55519713-55519861
Coord A exon
chr13:55519628-55519712
Coord C2 exon
chr13:55519327-55519627
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GCTGCCTGTTCCCCACCCAGGGT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGGCTGAAGAATACTCCACCTTCCTGCAGGAGGCACAGGTTCCCTTTATCGCCCTGGATCGCTGCTCCAACTCTAACGTGCACGGAGACGCCATTCTCCCTGGGATGCTTTGCGCTGGCTTCTTGGAGGGAGGCACCGATGCCTGCCAG
Seq A exon
GTCAGCCCTGGGGTCCTGGTAGGTACCTTGGTCCCTGCCTGTCAAGCATAAGGCAAGAACCACGTGCTGCCTGTTCCCCACCCAG
Seq C2 exon
GGTGACTCCGGGGGCCCTCTGGTGTGTGAGGAAGGAACTGCAGAACATCAGCTCACCCTGCGCGGAGTCATCAGCTGGGGCTCCGGCTGTGGTGACCGCAACAAGCCCGGAGTCTACACAGACGTGGCCAACTACCTGGCTTGGATCCAGAAGCATATTGCTTCATAACTAACCAGGCTTTATCCTTCCCTCCTTGTGTGCTCCTTGGGATGGGACGATGAATGTGGCATGCTGGGTCACAGTGAAGCTAGTGCCCCGACACTGGGGGCACAGAAACTCAATAAAGTGCTTTGAAAACGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.7=100)
A:
NA
C2:
PF0008921=Trypsin=PD(20.3=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCCACCTTCCTGCAGGAG
R:
GCAGTTCCTTCCTCACACACC
Band lengths:
179-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: