BtaALTA0011556-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18009712-18011985:-
Coord C1 exon
chr7:18011866-18011985
Coord A exon
chr7:18009947-18010132
Coord C2 exon
chr7:18009712-18009946
Length
186 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
TGTATCCCCTACATTGGCAGGCA
3' ss Score
5.87
Exon sequences
Seq C1 exon
ACGTGGATGAATGCAATGGGCCTCATCGCTGCAAGCATGGCTGTCAGAACGAGCTGGGGGGCTATCGCTGCAGCTGCCCCCAGGGCTTCACCCCACATTCCCAGTGGAGCCAGTGTGTAG
Seq A exon
GCAAATTCTTTACCACTGACCCACCAGGGAAGCCCCCTATGGAGGTTTCGACATTGGTCTTGGGCTTGAAGAAGGAGCTGGAGTTGCTTCGTGGGGACGGGAGCAATGCAGGTGGAGGGCTCAGGAGATACGAAGGTGGCCCCCCGCCCCCCACCTCCCACCCTCTCTCCCCCTCCCCATCCACAG
Seq C2 exon
ATGAGAACGAGTGTGTCCTGTCACCCTCGGCCTGTGGCAGTGCCTCCTGCCACAACACGCTGGGCGGCTTCCGCTGTGTCTGCCCCTCGGGCTTTGACTTTGACCAGGCCGTTAGGGGCTGCCAGGACGTGGATGAGTGTGCGGCTCGGAGCGGCCCCTGCAGCTACAGCTGTGCCAATACCCCCGGTGGCTTCCTGTGCGGCTGCCCTCGAGGCTACTTCCGGGCTGGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-64-70,64-69-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=51.9),PF0764510=EGF_CA=PU(92.3=45.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAATGCAATGGGCCTCA
R:
GCACACTCATCCACGTCCTG
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development