BtaEX0014239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18009009-18011985:-
Coord C1 exon
chr7:18011866-18011985
Coord A exon
chr7:18009712-18009946
Coord C2 exon
chr7:18009009-18009159
Length
235 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCTCCCCATCCACAGATG
3' ss Score
11.83
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
ACGTGGATGAATGCAATGGGCCTCATCGCTGCAAGCATGGCTGTCAGAACGAGCTGGGGGGCTATCGCTGCAGCTGCCCCCAGGGCTTCACCCCACATTCCCAGTGGAGCCAGTGTGTAG
Seq A exon
ATGAGAACGAGTGTGTCCTGTCACCCTCGGCCTGTGGCAGTGCCTCCTGCCACAACACGCTGGGCGGCTTCCGCTGTGTCTGCCCCTCGGGCTTTGACTTTGACCAGGCCGTTAGGGGCTGCCAGGACGTGGATGAGTGTGCGGCTCGGAGCGGCCCCTGCAGCTACAGCTGTGCCAATACCCCCGGTGGCTTCCTGTGCGGCTGCCCTCGAGGCTACTTCCGGGCTGGGCAAGG
Seq C2 exon
GCACTGTGTCTCTGGCCTGGGCTTCAGCCCCGGATCCCAGGATGCCCCAGATGAGGGGGAGCCACTGTCACCTGAAGCCTGCTACGAATGCAAGATCAACGGCCAGCCTTCTCGTGACCGGCCACGGCGCAGCGCTCGTAGGGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'64-71,'64-70,65-71
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.373
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.9),PF0764510=EGF_CA=PU(92.3=45.6)
C2:
PF0764510=EGF_CA=PD(5.1=3.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAATGCAATGGGCCTC
R:
CTGGTGGTCCCTACGAGCG
Band lengths:
268-503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development