BtaEX6038511 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18006365-18009946:-
Coord C1 exon
chr7:18009712-18009946
Coord A exon
chr7:18009009-18009159
Coord C2 exon
chr7:18006365-18006718
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCTGTCCTGGCCAAGGCA
3' ss Score
4.34
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
ATGAGAACGAGTGTGTCCTGTCACCCTCGGCCTGTGGCAGTGCCTCCTGCCACAACACGCTGGGCGGCTTCCGCTGTGTCTGCCCCTCGGGCTTTGACTTTGACCAGGCCGTTAGGGGCTGCCAGGACGTGGATGAGTGTGCGGCTCGGAGCGGCCCCTGCAGCTACAGCTGTGCCAATACCCCCGGTGGCTTCCTGTGCGGCTGCCCTCGAGGCTACTTCCGGGCTGGGCAAGG
Seq A exon
GCACTGTGTCTCTGGCCTGGGCTTCAGCCCCGGATCCCAGGATGCCCCAGATGAGGGGGAGCCACTGTCACCTGAAGCCTGCTACGAATGCAAGATCAACGGCCAGCCTTCTCGTGACCGGCCACGGCGCAGCGCTCGTAGGGACCACCAG
Seq C2 exon
CCACCTGGTCTTTCTCCCCAGGCGAGCCTGGCCAGCCTTGACACGGAGGCTCCGCTGACCTTGGGACTGAACCTCTCCTGTCTGGGCCAGGCCCAGCATATCTTAGAGCTGAGGCCAGCGCTGGAGAGCCTGGGGGGCCGCGTCCGCTACGTCATTGCCCGCGGCAACGAAAGAGGCTTCTTCCGCATGCATCACCTTCATGGTCTCAGCTCCCTGCAGCTGGGGCACCGGAAGCCAGGGCCTGGCACATACCAGCTGGAGGTTGTGAGTGTGGGCGAGCCCTGGGGCACCCAGCCAGAGGGGCGGCCGGGGGGCCAAGCCTTGCGGCTGAAGGTGCAGTTGCAGCTGCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595-'65-72,'65-71,66-72=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.373 C2=0.376
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.9),PF0764510=EGF_CA=PU(92.3=45.6)
A:
PF0764510=EGF_CA=PD(5.1=3.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGACCAGGCCGTTAGG
R:
CTAAGATATGCTGGGCCTGGC
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]