RnoEX6058875 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53068495-53072185:-
Coord C1 exon
chr18:53071954-53072185
Coord A exon
chr18:53070412-53070589
Coord C2 exon
chr18:53068495-53068904
Length
178 bp
Sequences
Splice sites
3' ss Seq
GTTTTGCTTTTTGTAAACAGCCA
3' ss Score
6.51
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ATGAGAATGAATGTTCCAACCCCGGTGCCTGTGGCTCGGCCTCTTGCTATAACACCCTGGGGAGTTACAAGTGCGCCTGCCCCTCGGGCTTCTCCTTCGACCAGTTCTCCAGTGCCTGTCACGACGTGAACGAGTGCTCCTCCTCCAAGAACCCGTGCAGCTATGGCTGCTCCAACACGGAAGGAGGCTACCTCTGTGGCTGCCCACCAGGCTACTTCAGAGTGGGACAGGG
Seq A exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCAGTGGATTCGGAGGCAGAGGACGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAACGGCTACGCCAAGAAAGATGGCCGGCGGAAGAGGAGCGCGCCAGAGCCTGAGCCCGCCTCAGCA
Seq C2 exon
GAGGAGCAAATCAGCCTAGAAAGCGTTGCCATGGACAGCCCAGTCAACATGAAGTTCAACCTCTCCGGCCTCGGCTCCAAGGAGCACATCCTAGAACTGGTCCCCGCCATTGAGCCCCTCAACAACCACATCCGTTACGTCATCTCCCAAGGGAATGACGATGGTGTCTTCCGAATCCATCAAAGGAATGGGCTCAGCTACCTGCACACAGCCAAGAAGAAGCTCACTCCCGGCACATACACACTGGAAATCACCAGCGTCCCTCTTTATGGGAAGAAGGAGCTTAGGAAATTGGAGGAACGCAATGAGGATAGCTACCTCCTGGGGGTGCTGGGGGAGGCTCTCAGAATGAGGTTGCAGATTCAGCTGTATTAGCCCTTTGCAGACTTGGGTCCCAGCTCAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'58-63,'58-62,59-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.300 C2=0.065
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
PF0764510=EGF_CA=PD(5.1=3.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAATGTTCCAACCCCGGTG
R:
GGCAACGCTTTCTAGGCTGAT
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]