GgaEX0021450 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56586636-56593455:-
Coord C1 exon
chrZ:56593224-56593455
Coord A exon
chrZ:56591466-56591625
Coord C2 exon
chrZ:56586636-56588958
Length
160 bp
Sequences
Splice sites
3' ss Seq
CAGCTGCTTTTATTCAACAGCCA
3' ss Score
5.71
5' ss Seq
ACTGTACGT
5' ss Score
6.33
Exon sequences
Seq C1 exon
ATGAAAATGAGTGTTCCAATCCTAACACATGTGGCTCTGCTTCCTGCTACAACACACTCGGAAGTTACAAGTGTGCCTGCCCTTCTGGATTTTCTTATGACCAGTTCTCCAGTGCATGCCATGATGTGAATGAATGTTCTTCTGCCAAGAACCCCTGCAATTATGGTTGTTCCAACACTGAAGGTGGTTATCTTTGTGGCTGTCCACCAGGATATTACAGAGTTGGACAAGG
Seq A exon
CCACTGTGTCTCAGGGATGGGATTTAACAAAGGCCAGTACGTGCCAGTGGATGAAGATGCTGATGAAGAAAATGCTTTATCCCCTGAAGCCTGTTACGAGTGCAAAATCAATGGCTATCCAAAAAAAGACAACAGAAGGAAGAGAAGTCTTAATGAAACT
Seq C2 exon
ATTGAGCAGGTTAGCTTGGAAAGCCTGGACATGGATAGTCCTTTGAAGATGAGAGTCAACATTTCAAGGCTTGACAACAAGGAGCACATCCTAGAACTCATGCCAGCCATTGAGCCTCTTACCAACCATGTGCGCTACATCATCTCACATGGCAACGATGACGGCGTTTTTCGAATCCATCAGCGGGATGGACTCAGTTATTTGCACACAGCTAAGAAAAAGTCAGTGCCTGGAACATACACACTGGAAATCACTAGCATTCCTCTATATAAGAAAAAGGAGCTAAAGAAGCTGGAAGACAGCAATGAGGACAGCTACCTCCTTGGAGAGCTCGGGGAAGCTCTCAGAATGAGGTTGTGGCTAGAACTCTACTAGCCATCTTCCAGACTGAGTCCAGTTCTTCAGTCACTTCTGTTCACCTATTTACCCACCTATTTACGTTACACCCGAACGTATCTGCTTTTCAAAGGTTTTGGAACAGTCACTGACTTTTGGGGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.259 C2=0.032
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
PF0764510=EGF_CA=PD(5.1=3.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAAGTGTGCCTGCCCTT
R:
GTGCTCCTTGTTGTCAAGCCT
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]