BtaEX6039491 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26913090-26916293:+
Coord C1 exon
chr7:26913090-26913321
Coord A exon
chr7:26914675-26914846
Coord C2 exon
chr7:26916276-26916293
Length
172 bp
Sequences
Splice sites
3' ss Seq
TTGCATCTTGTTGCAAATAGCCA
3' ss Score
4.33
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACGAGAATGAATGCTCCAATCCCAATGCCTGTGGCTCTGCTTCCTGCTATAACACCCTGGGAAGCTACAAGTGCGCCTGCCCCTCCGGGTTCTCCTTCGACCAGTTCTCCAGTGCCTGCCACGACGTGAATGAGTGCTCATCTTCCAAGAACCCATGCAATTACGGCTGCTCCAACACAGAAGGGGGCTACCTCTGCGGCTGCCCACCTGGGTACTACAGAGTGGGACAGGG
Seq A exon
CCACTGCGTCTCAGGAATGGGATTTAACAAAGGGCAGTACCTATCGATGGATACAGAAGTAGACGAAGAGAATGCTCTGTCCCCGGAAGCGTGTTATGAGTGCAAAATCAACGGCTACTCTAAGAAAGACAACAGACAGAAGAGAAGTATTCATGAACCCAAACACATTGCT
Seq C2 exon
AGTGAAGATCCCTCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'101-102,'101-101,102-102=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.252 C2=0.833
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
PF0764510=EGF_CA=PD(5.1=3.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]