MmuEX6001735 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58008623-58013883:-
Coord C1 exon
chr18:58013652-58013883
Coord A exon
chr18:58012214-58012391
Coord C2 exon
chr18:58008623-58010632
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCATCTCGTAAACAGCCA
3' ss Score
5.54
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGAGAATGAATGTTCCAACCCAGGTGCCTGTGGCTCCGCCTCCTGCTACAACACCCTGGGGAGTTACAAGTGCGCCTGCCCCTCCGGGTTCTCCTTCGACCAGTTCTCCAGCGCCTGCCATGATGTGAATGAGTGTTCCTCCTCCAAGAACCCATGCAGCTACGGCTGCTCCAACACAGAAGGCGGCTACCTCTGCGGCTGCCCACCAGGGTACTTCAGAGTGGGACAGGG
Seq A exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCGGTGGATGCGGAGGCAGAGGATGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAATGGCTACACCAAGAAAGATGGCCGACGGAAGAGGAGCGCGCAGGAGCCTGAGCCCGCCTCAGCC
Seq C2 exon
GAGGAGCAAATCAGCCTGGAGAGCGTAGCCATGGACAGCCCAGTCAACATGAAGTTCAACCTCTCCGGCCTTGGCTCCAAGGAGCACATCCTAGAACTGGTCCCCGCCATTGAGCCCCTCAACAACCACATCCGTTATGTCATCTCGCAAGGGAACGAGGATGGCGTCTTCCGAATCCACCAAAGGAACGGGCTCAGCTACCTGCACACGGCCAAGAAGAAGCTCGCTCCCGGCACATACACACTGGAAATCACCAGCATCCCCCTCTATGGGAAGAAGGAGCTGAGGAAATTGGAGGAGCACAATGAGGACGACTACCTTCTGGGGGTGCTCGGGGAGGCTCTCCGAATGAGGTTGCAGATTCAGTTGTATTAGCCCTCTGCAGACTTGGGCCTTGGGCCCCAGCTCAGATCCCAGCACAGCCGGCCTTCAGAAGTGTTTGGAACATCACTGACTGATTTTGAAGAGGAAAAAAAACAAAAACAAACAAACAAACAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'71-79,'71-78,72-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.283 C2=0.065
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
PF0764510=EGF_CA=PD(5.1=3.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGTTCCAACCCAGGTGC
R:
TCTCCAGGCTGATTTGCTCCT
Band lengths:
247-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types