BtaINT0061213 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18009009-18009946:-
Coord C1 exon
chr7:18009712-18009946
Coord A exon
chr7:18009160-18009711
Coord C2 exon
chr7:18009009-18009159
Length
552 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
3' ss Seq
TGCCCTCTGTCCTGGCCAAGGCA
3' ss Score
4.34
Exon sequences
Seq C1 exon
ATGAGAACGAGTGTGTCCTGTCACCCTCGGCCTGTGGCAGTGCCTCCTGCCACAACACGCTGGGCGGCTTCCGCTGTGTCTGCCCCTCGGGCTTTGACTTTGACCAGGCCGTTAGGGGCTGCCAGGACGTGGATGAGTGTGCGGCTCGGAGCGGCCCCTGCAGCTACAGCTGTGCCAATACCCCCGGTGGCTTCCTGTGCGGCTGCCCTCGAGGCTACTTCCGGGCTGGGCAAGG
Seq A exon
GTGAGGGGCTTGAATGGAGTGAACCCAGAGCCCCCCATACCCCGGGAGTGCACACACACTCACGGGCCCACATGCAGGCATGTATATACATGTACGCTGAGAAATGGTGCAGAGGCCCAACAACACCTGTGGATGTGCATACACAAGCTCACACCCCACTGTAGTGTGTCATTGTCCTGTACACCTTCATGTGCTCAGTGCTAATATACTCGAGTGTGCACAGGGCTCACACCTATGCCAACATGCCTGGGTACCCTTGTGCATTCCTGTATCCCAGTGTGCACATGTGTGCAAGCCCATGTTGACAGGGTGCACGCAGGCTCACACACACACACACAGGTACACTCGGGTGTATATCCACACCTCTGCGTGCACGCAGGTTCACACCCACACCCACATAAGGGTGCACACACACATGTAGGTGCATGCAAAGACACACTGGCACACTCATCCTCGTCCCCATGGGCAGTGTGACTCCAAATGGAGTGTAGGGGGTTGGGTGGCTGGGGATGTCCCACCAGCCTGATTCACCTGCCCTCTGTCCTGGCCAAG
Seq C2 exon
GCACTGTGTCTCTGGCCTGGGCTTCAGCCCCGGATCCCAGGATGCCCCAGATGAGGGGGAGCCACTGTCACCTGAAGCCTGCTACGAATGCAAGATCAACGGCCAGCCTTCTCGTGACCGGCCACGGCGCAGCGCTCGTAGGGACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.9),PF0764510=EGF_CA=PU(92.3=45.6)
A:
NA
C2:
PF0764510=EGF_CA=PD(5.1=3.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGTGTGTCCTGTCACC
R:
GAAGGCTGGCCGTTGATCTTG
Band lengths:
342-894
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]