DreINT0010658 @ danRer10
Intron Retention
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4073588-4074430:-
Coord C1 exon
chr22:4074199-4074430
Coord A exon
chr22:4073748-4074198
Coord C2 exon
chr22:4073588-4073747
Length
451 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
TTTTACCTTTTCATTTCCAGGCA
3' ss Score
11.62
Exon sequences
Seq C1 exon
ATGAGAACGAATGCACTGGAAACCAAGTCTGTGGGTCGGCGTCTTGCTATAACACTCTGGGCAGCTATAAATGCGTGTGCCCGTCAGGTTTCGACTTTGAGGCCACTGCTGGGGGCTGTCAGGACGTTAATGAATGCTCCATGGGTAATAACCCCTGCAGCTATGGATGCTCCAACACAGATGGCGGATACTTGTGTGGATGTCCAGGAGGCTTCTACCGAGCTGGACAAGG
Seq A exon
GTCAGTATTTAAGCTGTCAGGTGTCAATTCCAGTTCTTGTAGTGCCACAGCTCTGCATAATTAAGTTCCAACCCTGCTCCACCACACTTACCTTAAGGTTTCTAAGGACTCAATTAGTTTGATCAGGTGTGTTTAATAAGAGTTAAAACAAAACCGTGCAGAGCTGTGGCCCTCCAGGACCTGGAATTGACACCTGTGAAGTACAGTAGATCAAAATACCAGCCTGAAAGTTTATACAAATCCTGAAGACCTGAATTATTTTAGTCAAGGAATATTTAGCATGGGCTAGAGTTTTCATATGTTTCTAGATGTTTCCAAGCACTATGCAAGTATCTTGGGACAAGTTTGGAGCCAAACTCTGCATGATGTTGGTCCTCCAGAATCACGATTGGAAATGAATGAATTGGAAAACTATAGGGTGGACTAAAATGTTTTACCTTTTCATTTCCAG
Seq C2 exon
GCACTGCATCAATGGGGTGGGCTTCCAGGGTCAGTTTGGCTCGGAGGGAGGAGACGATGAAGAGTCGCTGTCACCTGAGGCCTGCTACGAGTGCAAGATCAACGGTGACCTGGGAAAGAAAGGCCGTCACAGGCGTAATGCTGATGATAATGAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237:ENSDART00000167748:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.296
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(90.0=46.2)
A:
NA
C2:
PF0764510=EGF_CA=PD(7.5=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGGCGTCTTGCTATAAC
R:
ATCAGCATTACGCCTGTGACG
Band lengths:
345-796
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]