GgaINT0062455 @ galGal3
Intron Retention
Gene
ENSGALG00000014686 | FBN2
Description
NA
Coordinates
chrZ:55650867-55652867:-
Coord C1 exon
chrZ:55652636-55652867
Coord A exon
chrZ:55651038-55652635
Coord C2 exon
chrZ:55650867-55651037
Length
1598 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CAGCTGCTTTTATTCAACAGCCA
3' ss Score
5.71
Exon sequences
Seq C1 exon
ATGAAAATGAGTGTTCCAATCCTAACACATGTGGCTCTGCTTCCTGCTACAACACACTCGGAAGTTACAAGTGTGCCTGCCCTTCTGGATTTTCTTATGACCAGTTCTCCAGTGCATGCCATGATGTGAATGAATGTTCTTCTGCCAAGAACCCCTGCAATTATGGTTGTTCCAACACTGAAGGTGGTTATCTTTGTGGCTGTCCACCAGGATATTACAGAGTTGGACAAGG
Seq A exon
GTGAGTATATCCCTCACAGTACTTCATCAGAGACTGATTCAAAGGATGACAGAAAGGCAGGATAGCAAGACAGTTAGACTGAAAAGCAAGTGAAGGAAAAGCTACTGATTCACATGTCTTTTTCTACAGTTTTTGTGAACAATATACACAGGCTGTGAATAAATACCTGTAGCATTAAAAAAAAAAAATTACCTGCAGCATGACACCCATTTCAAATCTAACATGTAAACAACATTATACAGTTAGTTCTGCTTCCTCTGCTAATATCTTCACAAGAACTATCCATCGTAATTGAAAAGTCATGGCAGTCTGGTGAAGTTCCCACTGACTGGAAAAGGGGAAACATAACCCCATTTTCAAGAAGGGAAAAAAAGAAGATCTGGGGATCTACAGGCCAGTCTATCTGACCTCTGTACCTGGCAAGATCATGAAGCAGATCCTCCTGAAGGCCGTACTAAGGCAGATGGAAAATAACGATGAGGTGATTGGTGGTAACCAATGTGGCTTCACCAAGGGCAAGTCATGTCTGATAGACTTGGTGGCCTTTATGATGGAGTTACAGTGTCAAAGGAAGAACAACTGACATAATCTACCTGGACTTCTGCAAAGTGTTTGACACTGTCCTGCATGACATCCTGGTCACCAGATTGGAGAAAAAAAAGGATGTGATGGATGGGCCACTTGCTGGATGAGGAAATGTATGGTTGGTCATACTCAGAGAGTTGTGGTCAATGTCTCAGTGTCCAAGTGGAAATCGGTGACTGGTGGTGTTCTTCATGGATGGGTGTTGGGACAGGTGTCACCCTCAGCAAGTTTGCGGAGAACACCAAGCTGAGTGGTGCAGTCCACATGCTAGAGGAATGGGATTCCATCCAGAGGGACCTGGGCAGGCTTGAGAGGTGAACCCAGGCAAACCTCTTGAAGTTCAGCAAGGCCAGGTGCAAGGTCTTGCACCTGGGTAAAGTCAATCGCAAGCACAAATATAGGCTGGGCAGGGAATGGCTTCAGAGCAGCCCTGGGCAGAAGGATTTGGGTATGTTGGTTGATGAAAGACTCAACATGAGTCAGCAATGTGTGCTGGCATCCCAGAAGGCCAGCTGTATCCTCGGTTGTATCAAGAGAATTGTGATCAGCAGGTCGAGGGAGGTGATTCTGCCCCTCTACTCTGCTCTTGTGAGACCCCACCTGGAGTACTGCATCCAGTTCTGGGACCCCCAGCACAAGAGGTTTAAGACACAGTGATCAACTCAAACACATGTTAAACACAAATTAACATCATTCTGATACATGACAAACACTAAAATCTTTATTACCAAAGTCAGGGAATATTGGTTTTTTGTTTGTTTTTTTTTCTTCATAATATTTGTTAATGAAAATTAGAAAAGCTTAGTTACACACCTTCAGCCAGCAGTTGCATTTCATTCAGTATGTGAATGTATTTCATTCACTAGTGCAAAGAAAATTCACAGACATCTTGGTGAAGAAAGAGAAAAGGAGGGGATACCAATGGCATAGTACAGATTACATGCACTCATTTTCCATTTAATTGAACAGTTCATAAAACTGCAAGATCTAAAACAGCTGCTTTTATTCAACAG
Seq C2 exon
CCACTGTGTCTCAGGGATGGGATTTAACAAAGGCCAGTACGTGCCAGTGGATGAAGATGCTGATGAAGAAAATGCTTTATCCCCTGAAGCCTGTTACGAGTGCAAAATCAATGGCTATCCAAAAAAAGACAACAGAAGGAAGAGAAGTCTTAATGAAACTGTACGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686:ENSGALT00000023666:71
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
NA
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTGCTTCCTGCTACAAC
R:
AGACTTCTCTTCCTTCTGTTGTCT
Band lengths:
350-1948
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]