BtaINT0061150 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26913090-26914846:+
Coord C1 exon
chr7:26913090-26913321
Coord A exon
chr7:26913322-26914674
Coord C2 exon
chr7:26914675-26914846
Length
1353 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TTGCATCTTGTTGCAAATAGCCA
3' ss Score
4.33
Exon sequences
Seq C1 exon
ACGAGAATGAATGCTCCAATCCCAATGCCTGTGGCTCTGCTTCCTGCTATAACACCCTGGGAAGCTACAAGTGCGCCTGCCCCTCCGGGTTCTCCTTCGACCAGTTCTCCAGTGCCTGCCACGACGTGAATGAGTGCTCATCTTCCAAGAACCCATGCAATTACGGCTGCTCCAACACAGAAGGGGGCTACCTCTGCGGCTGCCCACCTGGGTACTACAGAGTGGGACAGGG
Seq A exon
GTAAGACCCTCCACCTCCCCCACACATGGGAAAGTGAGCAGGGTCCAGTGCCTGGCCACCTGGCACTGGGGGAAGGTAAATGGCGATTAAAAGCTGGCTAGGGAAAAGCATTGATCAGAGCATTTAGGTATGGGAGGAAGAAGCTCCAGGAAGGCATGTGGATTCCCTGCTTTGTGGTGAGCATTGGACTCGAACTTGTATATGGGTATCATTCTCTGGTGTTTTACAATGGCCTGAATAAATCCCTTAAGGTCAGAGACAGCAGATGTTTAAAGATACTATGGCTCCTGTGTTATCAAAGACACCTGGGCTAAGAGATACAAATGGAAATGGCTTCGCCCAGTGTCTTACATGAATTTTGGCAGGTACTAGCCCTGTGCTAGTGGCTCAGATGGCTCAGTGGGTAAAGAATCCGCCTGCAATGCAGGAGATGAGGATTCAATCCCAGAGTCAGAAAGCTCTCCTGGAGGAGGGCAAGGCAACCCACTCCGGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCAGGCTATAGTCCATGGGGTCACAAAGAGTGGAACACGACTGAATGATTAAGCACAGCCCTGTGCTCCATGAGGAAGGAGCTGTCCCTCTCTTTGCTCATCTGGCGTTTTGCTGCACAGAGAGGACATGCCTGGTTGGTGTGACACTGTCTCCACAAGGCTGGGTCCCTTCAGCTAGTCCCCTTTCCCAAGTGCAGCCGTCTCAAGTCCTATTAGCTGAGGTGCTGGCCACCTGCCTCCCTCCTTCACAGAAGCCAGCACTCCACAGCCCAGAAGATGGGAATTTAGGAGTCATCTTCCCCAGAAGGAACAGTGTGTGAGTCAGACACTGAGGGTTGTTGGATTAATATGTCCACCGTGGGTACATAATAATACTTGAAACAGAAATCTTGGTGTAGACAAGGGTCATTTAGTGTCAGCTCGCTAACTCTTTCATTAATCAAAATAGGAGTTCAGCAAGCTCAGTTGGTAAGCAGCAGATGTAGGCTTCAGGTTTTGGAATCAACAGAACTTCTAACACTCTGAAAATTCATACTTGACTTTTACCATCTTGATTTAATTACACAGAGTGCTTCAGTCTAATCAGGATTGAAAATTGGGGAAACTTGGGGCTCACTCTTGGAAGAATTTTGCTGTTTAAAATAAAGGAGAATCTCATGCATTAAGTGCTAAAGTAAAGTTACCAAGTCTATTAGGTTTTTATGTTTATGATCTTAGGGTTTGCTTTGTGGGTTTCTTATTTTGGAAAAACCTCTGCTCTACCTCTGGAAAACAATAGAGTTATGATGAAGTCTAACATCAATTTGCATCTTGTTGCAAATAG
Seq C2 exon
CCACTGCGTCTCAGGAATGGGATTTAACAAAGGGCAGTACCTATCGATGGATACAGAAGTAGACGAAGAGAATGCTCTGTCCCCGGAAGCGTGTTATGAGTGCAAAATCAACGGCTACTCTAAGAAAGACAACAGACAGAAGAGAAGTATTCATGAACCCAAACACATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:97
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.252
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
NA
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCCAATCCCAATGCCTG
R:
AGAGTAGCCGTTGATTTTGCACT
Band lengths:
343-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]