GgaEX6027644 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:365265-368092:+
Coord C1 exon
chr28:365265-365496
Coord A exon
chr28:366958-367126
Coord C2 exon
chr28:367718-368092
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCTGCTTTTCTGCCACCAGACA
3' ss Score
8.62
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGAAAATGAGTGCTCCAGCCCAACTGCCTGTGGCTCTGCCTCCTGCTACAACACTCTGGGAAGTTTCAAGTGCGTCTGTCCGTCTGGCTTTGACTTTGACCAGGCCTTTGGGGGGTGCCAGGATGTGGATGAATGCTCAGCTGGCGGCAGCCCCTGCAGTTATGGCTGCTCCAACACGGATGGAGGTTACCTCTGTGGCTGTCCTGGAGGCTACTTCCGAGCAGGACAAGG
Seq A exon
ACACTGTATTTCTGGCTTGGGCTTTGGGAAAGGGTCCTACCTTCCTGCCCCTCAAGAGGAGGATGAAGACAATCTGCTCTCCCCTGAAACCTGCTATGAGTGCAAGATAAATGGCTACCCCAAGAGAGGTAGACAACGACGCAGTGTCAATGGCACTGAGAGGCACAAG
Seq C2 exon
GATCACACTGTGAATTTGGCCAGCATGGATGTGGAGGCTCCTCTGTCCATGATGCTGAACCTCTCTGACCTGGCACACAACGAGCACATCCTGGAGCTTCTGCCAGCTGTGGAGCCCCTGGAGAACCGTGTGCGGTACCTCATCTCCCATGGGAATGAGGATGGCTTCTTCCGCATCCACCAAAAAGAAGGGCTCAGCTTCCTGCACCTTGGCCGCAAGAAAATAGTGCCTGGCACCTACCTGCTGGAAATCATGAGCGTGCCCCTGTACCGCAAGAGGGAACTGCAGAAACTAGAGGCCAAGAATGACCTCAACTACTTAGCAGGGGAGCTGGGCCAAGCACTGAGGATGAAGCTCCAGCTCCAGCTCTACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'65-72,'65-71,66-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.281 C2=0.048
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
A:
PF0764510=EGF_CA=PD(5.1=3.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGAGTGCTCCAGCCCA
R:
TGCTGGCCAAATTCACAGTGT
Band lengths:
255-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]