GgaEX6027645 @ galGal3
Exon Skipping
Gene
ENSGALG00000000327 | Q804J3_CHICK
Description
NA
Coordinates
chr28:364938-367126:+
Coord C1 exon
chr28:364938-365057
Coord A exon
chr28:365265-365496
Coord C2 exon
chr28:366958-367126
Length
232 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTGTCTCTGGTGCAGATG
3' ss Score
10.16
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGACGGAAACCACCGGTGCCAGCATGGCTGCCAGAACGTGCTTGGAGGCTACAGATGTGGCTGTCCACAGGGCTATGTGCAGCACTACCAGTGGAATCAGTGTGTGG
Seq A exon
ATGAAAATGAGTGCTCCAGCCCAACTGCCTGTGGCTCTGCCTCCTGCTACAACACTCTGGGAAGTTTCAAGTGCGTCTGTCCGTCTGGCTTTGACTTTGACCAGGCCTTTGGGGGGTGCCAGGATGTGGATGAATGCTCAGCTGGCGGCAGCCCCTGCAGTTATGGCTGCTCCAACACGGATGGAGGTTACCTCTGTGGCTGTCCTGGAGGCTACTTCCGAGCAGGACAAGG
Seq C2 exon
ACACTGTATTTCTGGCTTGGGCTTTGGGAAAGGGTCCTACCTTCCTGCCCCTCAAGAGGAGGATGAAGACAATCTGCTCTCCCCTGAAACCTGCTATGAGTGCAAGATAAATGGCTACCCCAAGAGAGGTAGACAACGACGCAGTGTCAATGGCACTGAGAGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000327-'64-71,'64-70,65-71=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.281
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGTGTGACGGAAACCA
R:
CTTGTGCCTCTCAGTGCCATT
Band lengths:
285-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]