MmuEX6001734 @ mm10
Exon Skipping
Gene
ENSMUSG00000024598 | Fbn2
Description
fibrillin 2 [Source:MGI Symbol;Acc:MGI:95490]
Coordinates
chr18:58012214-58018856:-
Coord C1 exon
chr18:58018737-58018856
Coord A exon
chr18:58013652-58013883
Coord C2 exon
chr18:58012214-58012391
Length
232 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCCTTTTTGAACAGATG
3' ss Score
9.58
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATGTCGATGAGTGTGATGGGAATCACAGGTGCCAACACGGCTGCCAGAATATCCTGGGAGGCTATCGGTGCGGCTGCCCGCAGGGCTACGTCCAGCACTACCAGTGGAACCAGTGTGTTG
Seq A exon
ATGAGAATGAATGTTCCAACCCAGGTGCCTGTGGCTCCGCCTCCTGCTACAACACCCTGGGGAGTTACAAGTGCGCCTGCCCCTCCGGGTTCTCCTTCGACCAGTTCTCCAGCGCCTGCCATGATGTGAATGAGTGTTCCTCCTCCAAGAACCCATGCAGCTACGGCTGCTCCAACACAGAAGGCGGCTACCTCTGCGGCTGCCCACCAGGGTACTTCAGAGTGGGACAGGG
Seq C2 exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCGGTGGATGCGGAGGCAGAGGATGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAATGGCTACACCAAGAAAGATGGCCGACGGAAGAGGAGCGCGCAGGAGCCTGAGCCCGCCTCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024598-'68-78,'68-76,71-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.283
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGATGAGTGTGATGGGAA
R:
TCCTGCGCGCTCCTCTTC
Band lengths:
278-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types