BtaEX6039492 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26908013-26914846:+
Coord C1 exon
chr7:26908013-26908132
Coord A exon
chr7:26913090-26913321
Coord C2 exon
chr7:26914675-26914846
Length
232 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCTTTATGTTCTCAGACG
3' ss Score
7.46
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGATGGAAACCATAGGTGCCAGCATGGCTGCCAGAACATCCTGGGAGGCTATAGGTGTGGCTGCCCGCAAGGGTATATTCAGCATTACCAGTGGAATCAGTGTGTTG
Seq A exon
ACGAGAATGAATGCTCCAATCCCAATGCCTGTGGCTCTGCTTCCTGCTATAACACCCTGGGAAGCTACAAGTGCGCCTGCCCCTCCGGGTTCTCCTTCGACCAGTTCTCCAGTGCCTGCCACGACGTGAATGAGTGCTCATCTTCCAAGAACCCATGCAATTACGGCTGCTCCAACACAGAAGGGGGCTACCTCTGCGGCTGCCCACCTGGGTACTACAGAGTGGGACAGGG
Seq C2 exon
CCACTGCGTCTCAGGAATGGGATTTAACAAAGGGCAGTACCTATCGATGGATACAGAAGTAGACGAAGAGAATGCTCTGTCCCCGGAAGCGTGTTATGAGTGCAAAATCAACGGCTACTCTAAGAAAGACAACAGACAGAAGAGAAGTATTCATGAACCCAAACACATTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307-'100-101,'100-99,101-101=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.252
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGATGAATGTGATGGAAACCA
R:
AGCAATGTGTTTGGGTTCATGA
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]