RnoEX0035163 @ rn6
Exon Skipping
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53070412-53077178:-
Coord C1 exon
chr18:53077059-53077178
Coord A exon
chr18:53071954-53072185
Coord C2 exon
chr18:53070412-53070589
Length
232 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTTTCTCTGAACAGATG
3' ss Score
11.49
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATGTTGACGAATGTGACGGAAACCACAGGTGCCAACATGGCTGCCAGAACATCCTGGGGGGTTACCGGTGCGGCTGCCCGCAGGGATATGTCCAGCACTACCAGTGGAACCAGTGTGTCG
Seq A exon
ATGAGAATGAATGTTCCAACCCCGGTGCCTGTGGCTCGGCCTCTTGCTATAACACCCTGGGGAGTTACAAGTGCGCCTGCCCCTCGGGCTTCTCCTTCGACCAGTTCTCCAGTGCCTGTCACGACGTGAACGAGTGCTCCTCCTCCAAGAACCCGTGCAGCTATGGCTGCTCCAACACGGAAGGAGGCTACCTCTGTGGCTGCCCACCAGGCTACTTCAGAGTGGGACAGGG
Seq C2 exon
CCACTGTGTCTCGGGAATGGGCTTCAACAAAGGACAGTACCTGTCAGTGGATTCGGAGGCAGAGGACGACGAAAACGCTCTGTCCCCAGAAGCATGCTACGAGTGCAAAATCAACGGCTACGCCAAGAAAGATGGCCGGCGGAAGAGGAGCGCGCCAGAGCCTGAGCCCGCCTCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219-'57-62,'57-61,58-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGAATGTGACGGAAACCA
R:
CTCTGGCGCGCTCCTCTT
Band lengths:
276-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]