GgaEX7004793 @ galGal4
Exon Skipping
Gene
ENSGALG00000014686 | fbn2
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C3A6]
Coordinates
chrZ:56591466-56595293:-
Coord C1 exon
chrZ:56595174-56595293
Coord A exon
chrZ:56593224-56593455
Coord C2 exon
chrZ:56591466-56591625
Length
232 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGTTTGCTTTCTAGATG
3' ss Score
10.6
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGTGGATGAATGTGATGGAAATCACAGATGCCAGCATGGCTGTCAAAACATCCTAGGTGGATACAGATGTGGATGCCCACAAGGGTATATTCAGCATTACCAGTGGAATCAATGTGTTG
Seq A exon
ATGAAAATGAGTGTTCCAATCCTAACACATGTGGCTCTGCTTCCTGCTACAACACACTCGGAAGTTACAAGTGTGCCTGCCCTTCTGGATTTTCTTATGACCAGTTCTCCAGTGCATGCCATGATGTGAATGAATGTTCTTCTGCCAAGAACCCCTGCAATTATGGTTGTTCCAACACTGAAGGTGGTTATCTTTGTGGCTGTCCACCAGGATATTACAGAGTTGGACAAGG
Seq C2 exon
CCACTGTGTCTCAGGGATGGGATTTAACAAAGGCCAGTACGTGCCAGTGGATGAAGATGCTGATGAAGAAAATGCTTTATCCCCTGAAGCCTGTTACGAGTGCAAAATCAATGGCTATCCAAAAAAAGACAACAGAAGGAAGAGAAGTCTTAATGAAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014686-'76-76,'76-74,77-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.259
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGATGAATGTGATGGAAATCA
R:
TTCATTAAGACTTCTCTTCCTTCTGT
Band lengths:
276-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]