DreEX6097185 @ danRer10
Exon Skipping
Gene
ENSDARG00000098237 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr22:4073588-4074638:-
Coord C1 exon
chr22:4074519-4074638
Coord A exon
chr22:4074199-4074430
Coord C2 exon
chr22:4073588-4073747
Length
232 bp
Sequences
Splice sites
3' ss Seq
CATCTTCCTTCCCTACCTAGATG
3' ss Score
10.45
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
Exon sequences
Seq C1 exon
ACGTCGATGAATGCGGTGGAAACCACCGGTGCCAACATGGCTGCCAAAACATGATGGGAGGATATCGCTGCGGCTGCCCACAGGGTTACGTTCAACACTACCAATGGAACCAGTGTGTGG
Seq A exon
ATGAGAACGAATGCACTGGAAACCAAGTCTGTGGGTCGGCGTCTTGCTATAACACTCTGGGCAGCTATAAATGCGTGTGCCCGTCAGGTTTCGACTTTGAGGCCACTGCTGGGGGCTGTCAGGACGTTAATGAATGCTCCATGGGTAATAACCCCTGCAGCTATGGATGCTCCAACACAGATGGCGGATACTTGTGTGGATGTCCAGGAGGCTTCTACCGAGCTGGACAAGG
Seq C2 exon
GCACTGCATCAATGGGGTGGGCTTCCAGGGTCAGTTTGGCTCGGAGGGAGGAGACGATGAAGAGTCGCTGTCACCTGAGGCCTGCTACGAGTGCAAGATCAACGGTGACCTGGGAAAGAAAGGCCGTCACAGGCGTAATGCTGATGATAATGAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098237-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.296
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(90.0=46.2)
C2:
PF0764510=EGF_CA=PD(7.5=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCGATGAATGCGGTGGAAA
R:
GAGCTCATTATCATCAGCATTACGC
Band lengths:
276-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]