RnoEX0035152 @ rn6
Exon Skipping
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117572199-117577060:-
Coord C1 exon
chr3:117576941-117577060
Coord A exon
chr3:117575273-117575504
Coord C2 exon
chr3:117572199-117572373
Length
232 bp
Sequences
Splice sites
3' ss Seq
TGGTCTTGTTTTCTCTGCAGACG
3' ss Score
10.4
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAGGGTAACCACCGCTGCCAACATGGCTGCCAGAACATCATTGGAGGCTATAGGTGCAGCTGCCCCCAGGGCTACCTCCAGCACTACCAGTGGAACCAGTGTGTAG
Seq A exon
ACGAAAACGAGTGCCTGAGTGCACATGTCTGTGGGGGAGCCTCCTGCCACAACACCCTGGGGAGTTACAAGTGCATGTGTCCTGCTGGCTTCCAGTACGAACAGTTCAGTGGAGGCTGCCAAGATATCAACGAGTGTGGCTCATCCCAGGCCCCCTGCAGTTATGGTTGCTCTAATACTGAGGGTGGCTACCTATGTGGCTGTCCTCCAGGATACCTCCGGATAGGCCAAGG
Seq C2 exon
GCATTGTGTTTCTGGAATGGGCATGGGCCGAGGTGGCCCAGAGCCACCTGCCAGTGGCGAGATGGATGACAACTCACTGTCCCCAGAGGCCTGCTATGAGTGTAAGATCAATGGCTACCCAAAACGAGGCAGGAAACGGAGAAGCACGAATGAAACAGATGCCTCTGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302-'73-76,'73-73,74-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.508
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGTGAGGGTA
R:
AGGCATCTGTTTCATTCGTGCT
Band lengths:
284-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]