MmuEX6104641 @ mm10
Exon Skipping
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125303086-125308589:-
Coord C1 exon
chr2:125308470-125308589
Coord A exon
chr2:125306270-125306501
Coord C2 exon
chr2:125303086-125303260
Length
232 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTGTTTTCTCTGCAGATG
3' ss Score
12.53
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAGGGTAACCACCGCTGTCAACATGGCTGCCAGAACATCATCGGAGGCTATAGGTGTAGCTGCCCCCAGGGCTACCTCCAGCACTACCAATGGAACCAGTGTGTAG
Seq A exon
ATGAAAACGAGTGCCTGAGTGCACATGTCTGTGGAGGAGCCTCCTGCCACAACACCCTGGGGAGTTACAAGTGCATGTGTCCCACCGGCTTCCAGTACGAACAGTTCAGTGGAGGCTGCCAAGACATCAATGAGTGTGGCTCATCCCAGGCCCCCTGCAGTTACGGTTGCTCTAATACTGAGGGTGGCTACCTGTGTGGCTGTCCACCAGGATACTTCCGGATAGGCCAAGG
Seq C2 exon
GCATTGTGTTTCTGGAATGGGCATGGGCCGAGGCGGCCCAGAGCCACCTGCCAGCAGCGAGATGGACGACAACTCACTGTCCCCAGAGGCCTGCTATGAGTGTAAGATCAACGGCTACCCAAAACGAGGCCGGAAACGGAGAAGCACGAACGAAACGGATGCCTCCGACATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204-'78-76,'78-75,81-76=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.508
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGACGAGTGTGAGGGTAA
R:
GAGGCATCCGTTTCGTTCGT
Band lengths:
284-516
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types