GgaEX1024531 @ galGal4
Exon Skipping
Gene
ENSGALG00000004960 | FBN1
Description
fibrillin 1 [Source:HGNC Symbol;Acc:HGNC:3603]
Coordinates
chr10:9675807-9680257:-
Coord C1 exon
chr10:9680138-9680257
Coord A exon
chr10:9676974-9677205
Coord C2 exon
chr10:9675807-9675981
Length
232 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTCTTCCTTTCCAGATG
3' ss Score
13.31
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGATGGAAACCATCGATGTCAGCATGGCTGCCAAAACATAATCGGAGGATACAGGTGTAGCTGCCCACAAGGATATCTCCAGCATTACCAGTGGAACCAATGCGTTG
Seq A exon
ATGAAAATGAATGTTTAAGTGCACACATTTGTGGAGGAGCATCTTGCCACAATACTTTGGGAAGCTATAAATGTATGTGCCCTACCGGATTTCAGTATGAACAGTTTAGTGGAGGTTGCCAAGATATCAATGAATGCGGTTCTGCACAAGCCCCATGCAGTTATGGTTGTTCAAATACTGAAGGTGGCTATGTCTGTGGATGTCCACCTGGTTACTTCAGAATAGGACAAGG
Seq C2 exon
ACACTGTGTTTCTGGAGTTGGGCTAGGCAAAGGTCAAGGACAAGAGCTTTCACTCAGCGGAGAAATGGATGACAACTCCCTGTCTCCAGAAGCTTGCTATGAATGTAAAATCAATGGCTATCCCAAGAGAGGAAGGAAGCGCAGAAGTACTAATGAAACTGCAAATGAAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960-'73-76,'73-75,77-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.305
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.1),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGATGAATGTGATGGAAACCA
R:
TGCTTCATTTGCAGTTTCATTAGT
Band lengths:
292-524
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]