BtaEX6053889 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62128887-62140277:+
Coord C1 exon
chr10:62128887-62129006
Coord A exon
chr10:62137366-62137597
Coord C2 exon
chr10:62140103-62140277
Length
232 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGGTTTTCCCTGCAGATG
3' ss Score
13.1
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGAGGGAAACCATCGCTGCCAGCACGGCTGCCAGAACATCATCGGCGGCTACAGGTGCAGCTGCCCCCAGGGCTATCTCCAGCACTACCAGTGGAACCAGTGTGTTG
Seq A exon
ATGAAAATGAATGCCTCAGTGCTCACATCTGTGGAGGAGCCTCCTGTCACAACACCCTGGGGAGCTACAAGTGCATGTGCCCTGCCGGCTTCCAATACGAACAGTTCAGTGGAGGTTGCCAAGACATCAACGAATGTGGCTCTGCTCAGGCCCCCTGCAGTTATGGCTGTTCCAATACTGAGGGCGGCTACCTGTGTGCCTGTCCACCTGGCTACTTCCGAATAGGCCAAGG
Seq C2 exon
GCACTGTGTTTCTGGAATGGGCATGGGCCGGGGAAACCCAGAGCCACCTGCCAGCGGTGAAATGGATGACAACTCACTCTCCCCAGAGGCTTGTTATGAGTGTAAGATCAACGGCTACCCCAAACGCGGCAGGAAGCGGAGAAGCGCAAATGAAACAGATGCCTCCAACATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278-'68-81,'68-79,69-81=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.475
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(12.5=7.3),PF146701=FXa_inhibition=PU(87.8=87.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF146701=FXa_inhibition=PD(9.8=5.1),PF0764510=EGF_CA=WD(100=51.3),PF0764510=EGF_CA=PU(92.3=46.2)
C2:
PF0764510=EGF_CA=PD(5.1=3.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGACGAGTGTGAGGGAA
R:
CTCAATGTTGGAGGCATCTGT
Band lengths:
295-527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]