BtaALTA0011900-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000016264 | FKBP8
Description
Bos taurus FK506 binding protein 8, 38kDa (FKBP8), mRNA. [Source:RefSeq mRNA;Acc:NM_001205721]
Coordinates
chr7:4569674-4570281:+
Coord C1 exon
chr7:4569674-4569762
Coord A exon
chr7:4570061-4570063
Coord C2 exon
chr7:4570064-4570281
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCCCCACCCCATCCCCCAGCAG
3' ss Score
4.63
Exon sequences
Seq C1 exon
GCCCTGGATCTCAGTGTCCCGCTCATGGACGTGGGGGAGACGGCTATGGTCACTGCTGACTCCAAGTACTGCTATGGCCCCCAGGGCAG
Seq A exon
CAG
Seq C2 exon
GAGCCCATACATCCCCCCACATGCGGCCCTGTGCTTGGAGGTGACTCTGAAGACTGCTGTGGATGGGCCTGACCTGGAGATGCTCACGGGGCAGGAGCGTGTGGCCCTGGCCAACCGGAAGCGGGAGTGTGGCAATGCTCACTATCAGCGGGCCGACTTCGTGCTGGCTGCCAACTCCTACGACCTCGCCATCAAGGCCATCACTTCCAGTGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016264-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(32.2=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(20.0=24.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACTGCTGACTCCAAGT
R:
TCAGAGTCACCTCCAAGCACA
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development