MmuALTA0007268-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000019428 | Fkbp8
Description
FK506 binding protein 8 [Source:MGI Symbol;Acc:MGI:1341070]
Coordinates
chr8:70531185-70531742:+
Coord C1 exon
chr8:70531185-70531273
Coord A exon
chr8:70531522-70531550
Coord C2 exon
chr8:70531551-70531742
Length
29 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CCTGTTGGCCACCTCCCCAGCAG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GCCCTGGACCTCAGTGTCCCGCTCATGGATGTGGGCGAGACAGCCATGGTTACCGCTGACTCCAAGTACTGCTACGGCCCCCAGGGCAG
Seq A exon
CAGGAGCCCATACATCCCCCCCCACGCAG
Seq C2 exon
CCCTGTGCCTGGAAGTCACCCTGAAGACGGCAGAGGATGGACCCGACCTGGAGATGCTGAGTGGGCAGGAGCGCGTGGCCCTGGCCAACCGCAAGCGGGAGTGTGGCAATGCCCACTACCAGCGTGCCGACTTTGTGCTGGCCGCCAATTCCTATGACCTGGCCATCAAGGCTATCACCTCCAACACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019428-16-11,16-10,16-9-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.076
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(32.2=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(19.1=23.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTGTCCCGCTCATGGAT
R:
TCCATCCTCTGCCGTCTTCAG
Band lengths:
121-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types