HsaALTA0003370-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000105701 | FKBP8
Description
FK506 binding protein 8 [Source:HGNC Symbol;Acc:HGNC:3724]
Coordinates
chr19:18538376-18539459:-
Coord C1 exon
chr19:18539371-18539459
Coord A exon
chr19:18538434-18538436
Coord C2 exon
chr19:18538376-18538433
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCCTGCTCCCACCCAACTAGCAG
3' ss Score
3.64
Exon sequences
Seq C1 exon
GCCCTGGATCTCAGTGTCCCACTCATGGACGTGGGGGAGACGGCCATGGTCACTGCTGACTCCAAGTACTGCTACGGCCCCCAAGGCAG
Seq A exon
CAG
Seq C2 exon
GAGCCCATACATCCCCCCGCACGCGGCCCTGTGCCTGGAGGTGACCCTGAAGACGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105701-22-20,22-19,22-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.008
Domain overlap (PFAM):
C1:
PF0025423=FKBP_C=FE(32.6=100)
A:
NA
C2:
PF0025423=FKBP_C=PD(19.1=23.0)
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCACTGCTGACTCCAAGT
R:
GTCTTCAGGGTCACCTCCAGG
Band lengths:
97-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains