BtaALTA0012244-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66992613-66994501:+
Coord C1 exon
chr3:66992613-66992758
Coord A exon
NA
Coord C2 exon
chr3:66994407-66994501
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAA
5' ss Score
7.46
3' ss Seq
CATTGTCTGTTGAAGTGCAGGTT
3' ss Score
2.28
Exon sequences
Seq C1 exon
GTCAAGCAGTTCCTGCTCCTACTGGTGCTCCACCAGGTGGTCAGCCAGATTATAGTGCAGCCTGGGCTGAGTACTATAGACAACAAGCAGCCTACTATGCCCAGACAAGTCCCCAGGGAATGCCACAGCATCCTCCAGCACCTCAG
Seq A exon
NA
Seq C2 exon
GTTTGATCCAGCCAGTATAGAACTAGCTCTGTAGGGGTGAGGAGGACTGTGCTGTGTATCATCCTTGATTGTGTTCCTTCAAGGAGCATTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-27-34,27-33-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.796 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF090055=DUF1897=PD(17.9=10.2),PF090055=DUF1897=WD(100=67.3)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCCCAGACAAGTCCCCAG
R:
CAGTCCTCCTCACCCCTACAG
Band lengths:
100-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development