BtaALTA0013031-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000013218 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:25572180-25575738:-
Coord C1 exon
chr2:25575615-25575738
Coord A exon
NA
Coord C2 exon
chr2:25572180-25572266
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AGGCTGTGCTTTTATTTTAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTCCAGCTGTCCTCAGTCAATCCCCCGTCTTTGTCACCACCAGGAACTACAGAAATTGAACAGAGTCTGTCTGGACTTTCTATTAGTTCAACTCCACCAGCTGTCAGTAATGTTCTCAGTACAG
Seq A exon
NA
Seq C2 exon
GTGTACCAACGGTACCATTATTGCCACCACAAGTAAACCAGTCCCTCACATCTATGCCGCCAATGAACCCAACTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013218-15-16,15-15-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCCACCAGCTGTCAGT
R:
GGGTTCATTGGCGGCATAGAT
Band lengths:
107-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development