HsaALTA1018460-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2 [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:170956436-170961749:+
Coord C1 exon
chr2:170956436-170956559
Coord A exon
chr2:170961663-170961734
Coord C2 exon
chr2:170961735-170961749
Length
72 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AGATTGTGCTTTCTTTTTAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCAGCTGTCCTCAGTTAATCCCCCGTCTTTGTCACCACCAGGAACTACAGGAATTGAACAGAGTCTGACTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCAGTAGTGTTCTCAGTACAG
Seq A exon
GTGTACCAACAGTACCGTTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAATCCAG
Seq C2 exon
CTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-26-30,26-29,26-28,26-27-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=NA C2=0.850
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains