BtaALTA0013877-1/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000017664 | HGF
Description
Bos taurus hepatocyte growth factor (hepapoietin A; scatter factor) (HGF), mRNA. [Source:RefSeq mRNA;Acc:NM_001031751]
Coordinates
chr4:39130980-39136529:+
Coord C1 exon
chr4:39130980-39131094
Coord A exon
NA
Coord C2 exon
chr4:39136442-39136529
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTAGCTTTTTGCCTTCGAGCTA
3' ss Score
-0.72
Exon sequences
Seq C1 exon
ACTACATTAGAAACTGTATCATTGGTAAAGGCGGTAGCTACAAGGGGACGGTATCTATCACTAAAAGTGGCATCAAATGTCAGCCCTGGAATTCCATGATACCACACGAACACAG
Seq A exon
NA
Seq C2 exon
CTATCGGGGTAAAGACCTACAGGAAAACTACTGTCGAAATCCTCGAGGGGAAGAAGGGGGACCTTGGTGTTTCACAAGCAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017664-3-6,3-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(41.8=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAAATGTCAGCCCTGGA
R:
CCCTTCTTCCCCTCGAGGATT
Band lengths:
104-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development