RnoALTA0018085-1/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000007027 | Hgf
Description
hepatocyte growth factor [Source:RGD Symbol;Acc:2794]
Coordinates
chr4:15487810-15493166:-
Coord C1 exon
chr4:15493052-15493166
Coord A exon
NA
Coord C2 exon
chr4:15487810-15487897
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACTAGCTTTTTGCCTTCGAGCTA
3' ss Score
-0.72
Exon sequences
Seq C1 exon
ACTATATTAGAAATTGCATCATTGGTAAAGGAGGCAGCTATAAGGGGACAGTATCCATCACTAAGAGTGGCATCAAGTGCCAGCCTTGGAATTCCATGATCCCCCATGAACACAG
Seq A exon
NA
Seq C2 exon
CTATCGCGGTAAAGACCTACAGGAAAACTACTGTCGAAATCCTCGAGGGGAAGAAGGGGGACCCTGGTGTTTCACAAGCAATCCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007027-3-6,3-5-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(41.8=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(57.0=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGATCCCCCATGAACACA
R:
TGCTTGTGAAACACCAGGGTC
Band lengths:
102-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]