BtaALTA0014760-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16383061-16383913:+
Coord C1 exon
chr7:16383061-16383171
Coord A exon
chr7:16383714-16383715
Coord C2 exon
chr7:16383716-16383913
Length
2 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCA
5' ss Score
7.87
3' ss Seq
CGTTACTATGTTCTCTCTAGAGG
3' ss Score
7.25
Exon sequences
Seq C1 exon
TTCAAATACCCCCGAGCACCACCTACGCCATTACGCCCATGAAACGCCCCATGGAGGAAGATGGGGAGGAAAAGTCTCCTAGCAAAAAGAAGAAGAAGATTCAGAAGAAAG
Seq A exon
AG
Seq C2 exon
GAGAAGGCAGAGCCTCCACAAGCAATGAATGCCCTGATGAGACTGAACCAGCTCAAACCAGGGCTGCAGTACAAACTGATTTCCCAGACCGGTCCAGTGCACGCCCCCATTTTTACCATGTCAGTTGAGGTGGACGGGAGCTCCTTCGAGGCCTCTGGGCCCTCCAAAAAGACGGCCAAGCTGCACGTGGCTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-11-13,11-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.921 A=NA C2=0.791
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=86.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCCCCATGGAGGAAGAT
R:
TCATTGCTTGTGGAGGCTCTG
Band lengths:
98-100
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development