DreALTA0014340-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000105177 | ilf3b
Description
interleukin enhancer binding factor 3b [Source:ZFIN;Acc:ZDB-GENE-030131-587]
Coordinates
chr3:13710302-13710705:+
Coord C1 exon
chr3:13710302-13710412
Coord A exon
NA
Coord C2 exon
chr3:13710506-13710705
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAGAT
5' ss Score
-2.07
3' ss Seq
TTCCTGCTGTTCAGCTCCAGACG
3' ss Score
2.1
Exon sequences
Seq C1 exon
TTCAAATCCCACCCAGCACAACCTACGTGCCGCCAATGAAACGACCCATAGAGGAGGAGTCCACCGATGAGAAGAATCCTAACAAGAAGAAGAAGAAGCTGCAGAAGAAAT
Seq A exon
NA
Seq C2 exon
ACGAGAAAGCGGAGCCTGCACAGGCCATGAACGCTCTCATGCGACTGAATCAGCTGAAGCCGGGCCTGCAGTATAAACTCATCTCTCAGACCGGGCCTGTTCATGTTCCTGTGTTCACCATGTCTGTAGAAGTGGATGGAAAGAACTTTGAAGCCTCCGGTCCCTCCAAACGCACTGCAAAACTACACGTTGCTGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000105177-14-22,14-21-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=0.696
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0003520=dsrm=PU(90.6=84.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGAGTCCACCGATGAGAA
R:
CATGAGAGCGTTCATGGCCTG
Band lengths:
100-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]