BtaALTA0014761-2/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16384261-16384968:+
Coord C1 exon
chr7:16384261-16384428
Coord A exon
chr7:16384843-16384845
Coord C2 exon
chr7:16384846-16384968
Length
3 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCCCTGAGAACGTAAAACAGCAG
3' ss Score
-3.32
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCCACGGGTGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCCGCTGAGGAGACAGAGGCAAAGCCTGCCGTGGTGGCCCCTCCACCTGTGGTGGAAACCGTCTCGACGCCCAGTGCTGCCTTCCCCTCTGATCCCACCACCGAG
Seq A exon
CAG
Seq C2 exon
GGGCCGATCCTGACCAAGCATGGCAAGAACCCTGTTATGGAACTTAACGAGAAGAGGCGTGGCCTCAAGTACGAACTCATCTCAGAGACAGGGGGCAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076-13-18,13-17,13-16,13-15-2/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=76.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCTCTGATCCCACCAC
R:
GAGTTCGTACTTGAGGCCACG
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development