BtaINT0076040 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040076 | ILF3
Description
interleukin enhancer binding factor 3, 90kDa [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr7:16384261-16384968:+
Coord C1 exon
chr7:16384261-16384428
Coord A exon
chr7:16384429-16384842
Coord C2 exon
chr7:16384843-16384968
Length
414 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCCCTGAGAACGTAAAACAGCAG
3' ss Score
-3.32
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCCACGGGTGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCCGCTGAGGAGACAGAGGCAAAGCCTGCCGTGGTGGCCCCTCCACCTGTGGTGGAAACCGTCTCGACGCCCAGTGCTGCCTTCCCCTCTGATCCCACCACCGAG
Seq A exon
GTGAGCACAGGGTGGGTGCTGTGAGGCCCCACAGGAGTGCCCTGGGGTCCCCTGAACAAGGACAGTCACTGGTCCTCGTTCTCTTCCTCCAGAAGCATAACAGCCTTCCAGTCCAGGGCCCTGGGGGGGCAGAGTTGAAGTGTGAGCTGTCAAAGCCTGTGCTGGCGTTGACCCAACACCGGGGGCTGCACCTGGGAGGCCTGCAGTCGAGGCTCGGCTGTTTCCCTGAGAGAGACGGCGTGGGGGAGGTGGTCCCATTGCTGGCAAGCCCGCGGATGGTTTCCAGGGGGTGGGCAGCAGTGAGTGGAGCGGAGGGCCTCAGACCCTTAACACAGGGGCGGCTGCCACCTGTTGGAAATACCTTAGCTGAGTTTGTTGGTGTTCTTTTCTGTTTTCCCTGAGAACGTAAAACAG
Seq C2 exon
CAGGGGCCGATCCTGACCAAGCATGGCAAGAACCCTGTTATGGAACTTAACGAGAAGAGGCGTGGCCTCAAGTACGAACTCATCTCAGAGACAGGGGGCAGCCACGACAAACGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040076:ENSBTAT00000018818:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.905
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=76.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTACAGGACATGGGCTTG
R:
CTCCATGACGAAGCGTTTGTC
Band lengths:
294-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]