HsaINT0080497 @ hg38
Intron Retention
Gene
ENSG00000129351 | ILF3
Description
interleukin enhancer binding factor 3 [Source:HGNC Symbol;Acc:HGNC:6038]
Coordinates
chr19:10682537-10683262:+
Coord C1 exon
chr19:10682537-10682704
Coord A exon
chr19:10682705-10683124
Coord C2 exon
chr19:10683125-10683262
Length
420 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCTTTTCTGTTTTCCCTGAGAAC
3' ss Score
0.39
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGCTTGCCGACGGGTGCTGAAGGCAGGGACTCGAGCAAGGGGGAGGACTCGGCTGAGGAGACCGAGGCGAAGCCAGCAGTGGTGGCCCCTGCCCCAGTGGTAGAAGCTGTCTCCACCCCTAGTGCGGCCTTTCCCTCAGATGCCACTGCCGAG
Seq A exon
GTGAGCACATGGTGGGCGCTGGGAGTGACTGCCTGGACAGAGCAGGCAGCCATGTGTCCTGTCAGTGAGGTGGTTACTGGTCCTTGTTAATTTGCCCCAAAAAGTGGACCTTTCAGGCCAGAAGTCCGCACAGGAAGCTGGGTGCTGCCCTCCGAGCCGTGTCGGGGAGGGCCTTGTGGATGTTGTCCCAGCATCCTATAGGCTACACTGGGGTGGCCTTGGGTTGATAACGTGCTGTTCAGAGGGGAGGCACAGGAAGGGGGCACATTGCTGGAAGGCCCTCACTAGAGTCAGTGGAGACTCTGGCAAGGGCTGGCAGTGTATGAAGAGCAGAGGCCCTGCCTCAGTCCTGCCACTCCTCCCATGTGACTGGAATGCCCATAGCTGAGTTTGTCGGTCTTCTTTTCTGTTTTCCCTGAG
Seq C2 exon
AACGTAAAACAGCAGGGGCCGATCCTGACAAAGCACGGCAAGAACCCAGTCATGGAGCTGAACGAGAAGAGGCGTGGGCTCAAGTACGAGCTCATCTCCGAGACCGGGGGCAGCCACGACAAGCGCTTCGTCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000129351:ENST00000407004:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.911 A=NA C2=0.864
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=69.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACAGGACATGGGCTTGC
R:
CTCCATGACGAAGCGCTTGTC
Band lengths:
305-725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development