RnoINT0074291 @ rn6
Intron Retention
Gene
ENSRNOG00000022741 | Ilf3
Description
interleukin enhancer binding factor 3 [Source:RGD Symbol;Acc:619734]
Coordinates
chr8:22433567-22434855:+
Coord C1 exon
chr8:22433567-22433734
Coord A exon
chr8:22433735-22434729
Coord C2 exon
chr8:22434730-22434855
Length
995 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TCCCTGAGGGTGTCAAACAGCAG
3' ss Score
0.3
Exon sequences
Seq C1 exon
GTGTTACAGGACATGGGATTGCCAACAGGCGCTGAAGGCAGAGACTCCAGCAAGGGGGAGGACTCTGCTGAGGAGTCAGATGGGAAGCCAGCAGTAGTGGCCCCACCCCCTGTGGTGGAAGCAGTCTCCAACCCCAGTTCTGTCTTCCCTTCAGATGCCACTACTGAG
Seq A exon
GTGAGCCACCTGGTGGGTGCTAGAGATGGTGCTGCATGCAGGGTGGGTGCTAGGAATGACCTATTGCCAGAACAGAGCAGGTAGTTACTAGTCTTTACATGCAGAACAGAGGCAGGCTCGTCCAACCTGTGGCCCAGTGCGAAATCCCAAAATCACTTCACACAGTATGAGATTATTTTGCATTTTTTTTTGTTTTTTGTAACTGGGGTACCTGGTTCTCAGACTTAAACTGCTTCCCCCAACCCCCTTTCATTTTATCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAACACGTGTGCAGTGCCCTCATCCCTCAGAACTGAATTTCTGAATTTACAAAAGGTTATGAGCCACTGTGTAGGTGCTGGGAACTGAATGTGGAGAAGAGCCGGTGCTTTAAACCTCTGAGTTAGCTCTTTCCCCCTTTGATAGAGTAAGCGCCATGGCAATTGCACTTTATTATTATGATCTGTGTGTGTACACATGTGAGGACTAAGCATCCACAGCACACGTTTAGTGGTCATAACTTCTAGAAGTCTTCCTACTGTGTGGGCTCCAGAGACTGACTTGGATCATCAGGCTTGGTAGCAAGCATCTTTACCCATTGATCTTGCTTGTCCCTATGTGAGAACTTGGTATCTAGGAATGTTTTGCCCTATCAAAAGGTTGGACTTAACCTGCCAGATTAAGCAAGTCACCCGCACAGGAAGCTATGGAAGTCCTGCAGCCAAGAACCCTGTACCCAGGGAATCAGAATGACATGAGTGGAGGTGGTATTCACTGAGACCTGCCAGCTGGCATACACATAGGGGTGCAGAGGGGTTCAAGGGAGAACGCTTAGCTTATTGACTTTTCCTTTTGGGTGGTGGAGTGCCCAGTTCTAATTTATTGGGTTTTTTTTTTCTTTTTTTTTCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCTTTCCCTGAGGGTGTCAAACAG
Seq C2 exon
CAGGGGCCGATTTTGACTAAGCACGGCAAGAATCCTGTAATGGAGCTTAATGAGAAGAGACGTGGCCTCAAATATGAGCTCATTTCTGAGACAGGGGGCAGCCACGACAAACGGTTTGTTATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022741:ENSRNOT00000009354:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.857
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(6.2=7.1)
A:
NA
C2:
PF0003520=dsrm=PU(50.8=76.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTTACAGGACATGGGATTGC
R:
CAAACCGTTTGTCGTGGCTG
Band lengths:
286-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]